| MirGeneDB ID | Lpo-Novel-3 |
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| Family name |
LPO-NOVEL-3 (all species) |
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| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
L. polyphemus
|
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| Node of Origin (family) |
L. polyphemus
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Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666248.1: 468097-468155 [+]
Ensembl
|
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| Seed |
AUGAGAA |
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Precursor
(pre-Mir +30nt flank) |
CUUGUUAGCUGUAGCUGCUGGAAUAGUCUCAUUCAUAGCAGCCUCUCAUGUGAAUUUUAAAGGAUUACAUGAGAAGCUGCUCUGAAUGAGACUGUGUGAGAUCAACAUAUUCAUCUGGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUGUUAGCUGUAGCUG--| GGA U C AAUUUU
CU AUAGUCUCAUUCA AGCAGC UCUCAUGUG \
GA UGUCAGAGUAAGU UCGUCG AGAGUACAU A
UGGUCUACUUAUACAACUA^ GUG C A UAGGAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Lpo-Novel-3_5p* |
| mirBase accession | None |
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| Sequence |
0- AUUCAUAGCAGCCUCUCAUGUG -22
Get sequence
|
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| Mature sequence |
Lpo-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
37- CAUGAGAAGCUGCUCUGAAUGA -59
Get sequence
|
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