MirGeneDB 3.0

MirGeneDB ID

Lpo-Novel-2

Family name LPO-NOVEL-2 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) L. polyphemus
Node of Origin (family) L. polyphemus
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013665707.1: 1163776-1163839 [+] Ensembl
Seed GUAUUAC
Precursor
(pre-Mir +30nt flank)
CACUAUAUUUAAGUAACACUAGUUUUACAAUGUAUUACUUGGUGACCUCUGUGUGGAAUAGAUUAACAUUACAAGGGUCACUGAGUGAUAUAAUGUAAUACUAGUGUGCGACAGCAUUCUCUCC
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Structure
        10          20        30        40        50        60 
CACUAUAUUUAAGUAAC--|     U     A         UG      UC   GUGGAAUA 
                   ACUAGU UUACA UGUAUUACU  GUGACC  UGU        G
                   UGAUCA AAUGU AUAUAGUGA  CACUGG  ACA        A
CCUCUCUUACGACAGCGUG^     U     A         GU      GA   UUACAAUU 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ge Ge So So So To
Mature sequence

Lpo-Novel-2_5p

mirBase accessionNone
Sequence
0- UGUAUUACUUGGUGACCUCUGU -22
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Star sequence

Lpo-Novel-2_3p*

mirBase accessionNone
Sequence
42- AAGGGUCACUGAGUGAUAUAAU -64
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