| MirGeneDB ID | Lpo-Mir-5735-P2 |
|---|
| Family name |
MIR-5735 (all species) |
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| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
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| MiRBase ID |
|
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| Paralogues |
Lpo-Mir-5735-P1
|
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| Orthologues |
Csc-Mir-5735
Tur-Mir-5735
|
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| Node of Origin (locus) |
L. polyphemus
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| Node of Origin (family) |
Chelicerata
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Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013676824.1: 270-331 [+]
Ensembl
|
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| Seed |
GGACAAC |
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Precursor
(pre-Mir +30nt flank) |
UCAUAAUUUGCUGUGAUGAUUUUCUUCUCCACCUUUCUCUUGUUGUCUACUGUCCUGUGUUCAGAAUGCAGUGGACAACAAGAUAAUGGUGUGGAAGAAGACAGCUCUCAACCAAGAAACAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCAUAAUUUGCUGUGAUGA--| UC U C GUCCUGUG
UUUUCUUC CACC UU UCUUGUUGUCUACU U
AGAAGAAG GUGG AA AGAACAACAGGUGA U
AACAAAGAACCAACUCUCGAC^ GU U U CGUAAGAC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut +1 on the 5p arm. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Lpo-Mir-5735-P2_5p* |
| mirBase accession | None |
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| Sequence |
0- ACCUUUCUCUUGUUGUCUACU -21
Get sequence
|
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| Mature sequence |
Lpo-Mir-5735-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UGGACAACAAGAUAAUGGUGU -62
Get sequence
|
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