MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-5735-P2

Family name MIR-5735 (all species)
Seed GGACAAC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-5735-P1 
Orthologues Csc-Mir-5735 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Chelicerata
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013676824.1: 270-331 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUAAUUUGCUGUGAUGAUUUUCUUCUCCACCUUUCUCUUGUUGUCUACUGUCCUGUGUUCAGAAUGCAGUGGACAACAAGAUAAUGGUGUGGAAGAAGACAGCUCUCAACCAAGAAACAA
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Structure
        10          20        30        40        50        60
UCAUAAUUUGCUGUGAUGA--|       UC    U  C              GUCCUGUG 
                     UUUUCUUC  CACC UU UCUUGUUGUCUACU        U
                     AGAAGAAG  GUGG AA AGAACAACAGGUGA        U
AACAAAGAACCAACUCUCGAC^       GU    U  U              CGUAAGAC 
120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 5p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-5735-P2_5p*

mirBase accessionNone
Sequence
0- ACCUUUCUCUUGUUGUCUACU -21
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Mature sequence

Lpo-Mir-5735-P2_3p

mirBase accessionNone
Sequence
41- UGGACAACAAGAUAAUGGUGU -62
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