MirGeneDB 2.1

MirGeneDB ID

Loc-Novel-7

Family name LOC-NOVEL-6 (all species)
Seed AAAGUGA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Novel-6 
Orthologues
Node of Origin (locus) L. oculatus
Node of Origin (family) L. oculatus
Genome context
(LepOcu1)
LG7: 23411437-23411494 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGGAUCUAAAUACAGGUUACAUUACAAAUUACCUUGUAAUGUCAGCUUUAUGUUUGUGAUCAUGUAAAAGUGACAUUACAAGGUAAUUUGUACUGUAGCAUUGUUGCACUGUUUAAC
Get precursor sequence
Structure
        10          20        30        40        50        
AAGGAUCUAAAUACAGG--|    U                      GC     GUUUG 
                   UUACA UACAAAUUACCUUGUAAUGUCA  UUUAU     U
                   GAUGU AUGUUUAAUGGAACAUUACAGU  AAAUG     G
CAAUUUGUCACGUUGUUAC^    C                      GA     UACUA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Novel-7_5p*

mirBase accessionNone
Sequence
0- UACCUUGUAAUGUCAGCUUUAU -22
Get sequence
Mature sequence

Loc-Novel-7_3p

mirBase accessionNone
Sequence
36- AAAAGUGACAUUACAAGGUAAU -58
Get sequence