| MirGeneDB ID | Loc-Novel-6 |
|---|
| Family name |
LOC-NOVEL-6 (all species) |
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| Seed |
GUCUGAC |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
Loc-Novel-7
|
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| Orthologues |
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| Node of Origin (locus) |
L. oculatus
|
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| Node of Origin (family) |
L. oculatus
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Genome context
(LepOcu1) |
LG5: 24780936-24780993 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCUCACUCACAAACUGUGCCGUGCCAGGAGAGUCUGACAAAUAUGCGUGACAUGGCUGUGUGUUGUCAUGCAUAAAUGUGAGACAUCUUUUUGCACAAAAUAAUGUGCAAUGUGUGAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCUCACUCACAAACUGUGCC-- C -| G AA UGGCU
GUGC AGGAGA GUCU ACA UAUGCGUGACA \
CACG UUUUCU CAGA UGU AUACGUACUGU G
GAGUGUGUAACGUGUAAUAAAA U A^ G AA UGUGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
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Tissue expression
|
| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
| |
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| Mature sequence |
Loc-Novel-6_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGUCUGACAAAUAUGCGUGACA -22
Get sequence
|
|---|
| Star sequence |
Loc-Novel-6_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UCAUGCAUAAAUGUGAGACAUCU -58
Get sequence
|
|---|
