| MirGeneDB ID | Loc-Novel-5 |
|---|
| Family name |
LOC-NOVEL-5 (all species) |
|---|
| Species |
Spotted gar (Lepisosteus oculatus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
L. oculatus
|
|---|
| Node of Origin (family) |
L. oculatus
|
|---|
Genome context
(LepOcu1) |
LG4: 14294705-14294762 [+]
Ensembl
|
|---|
| Seed |
UCUGUUG |
|---|
Precursor
(pre-Mir +30nt flank) |
AUCACAUUUAAUUGUAAAGAUGUUGCAGCGUAGCAAGUACAGCAACACAAUUGUGUCCCCAUAGAAUUCUGUUGCUGUACUUGCUGCACAGCAGCAUGUGAUGUUACACCAUCAUGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUCACAUUUAAUUGUAAAG--| AGC C GUGUC
AUGUUGC GUAGCAAGUACAGCAACA AAUU C
UACGACG CGUCGUUCAUGUCGUUGU UUAA C
CCGUACUACCACAUUGUAGUG^ ACA C GAUAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Loc-Novel-5_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UAGCAAGUACAGCAACACAAUU -22
Get sequence
|
|---|
| Mature sequence |
Loc-Novel-5_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UUCUGUUGCUGUACUUGCUGCA -58
Get sequence
|
|---|
