MirGeneDB 2.1

MirGeneDB ID

Loc-Novel-3

Family name LOC-NOVEL-3 (all species)
Seed AAAGAUU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) L. oculatus
Node of Origin (family) L. oculatus
Genome context
(LepOcu1)
LG11: 30596926-30596984 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAGUAUAUGUCUCUUACAAAGGAGCAAGUAAAGAUUUAUUCCAUGCUAGAAUUCCAUCUUCUUUUCAGCAUGUUAUAAACCUUUACUUGUUUCUUUGCAGCCUACGCAUGCUGAUGC
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Structure
        10          20        30        40        50         
UGCAGUAUAUGUCUCUUA--|                A     UC      A  AUUCCA 
                    CAAAGGAGCAAGUAAAG UUUAU  CAUGCU GA      U
                    GUUUCUUUGUUCAUUUC AAAUA  GUACGA CU      C
CGUAGUCGUACGCAUCCGAC^                C     UU      -  UUUCUU 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Novel-3_5p

mirBase accessionNone
Sequence
0- UAAAGAUUUAUUCCAUGCUAGA -22
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Star sequence

Loc-Novel-3_3p*

mirBase accessionNone
Sequence
37- CAGCAUGUUAUAAACCUUUACU -59
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