| MirGeneDB ID | Hvu-Novel-5 |
|---|
| Family name |
HVU-NOVEL-5 (all species) |
|---|
| Seed |
GAAAGUC |
|---|
| Species |
Freshwater-polyp (Hydra vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
H. vulgaris
|
|---|
| Node of Origin (family) |
H. vulgaris
|
|---|
Genome context
(Hm105_1.0) |
Sc4wPfr_628: 712925-712976 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUUUGGUUAAAUUGGUCAUAUCGUUGUUCCUGAAAGUCUGAUUGGUCUUAUCGUUGCUCGAUAAGACCAUGAGACUUUCAGGAGCACCUAAUAAUAAUAAAAAAAAAAUCCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUUGGUUAAAUUGGUCAUAUCGU--| G U GUU
UGUUCCUGAAAGUCU AU GGUCUUAUC \
ACGAGGACUUUCAGA UA CCAGAAUAG G
CCCUAAAAAAAAAAUAAUAAUAAUCC^ G - CUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Hvu-Novel-5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAAAGUCUGAUUGGUCUUAUC -22
Get sequence
|
|---|
| Star sequence |
Hvu-Novel-5_3p* |
| mirBase accession | None |
|---|
| Sequence |
31- UAAGACCAUGAGACUUUCAGG -52
Get sequence
|
|---|
