| MirGeneDB ID | Hvu-Novel-12 |
|---|
| Family name |
HVU-NOVEL-12 (all species) |
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| Species |
Freshwater-polyp (Hydra vulgaris) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
|
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| Node of Origin (locus) |
H. vulgaris
|
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| Node of Origin (family) |
H. vulgaris
|
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Genome context
(Hm105_1.0) |
Sc4wPfr_92: 465151-465200 [-]
|
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| Seed |
UUCAUUA |
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Precursor
(pre-Mir +30nt flank) |
UUGAAGUUGAACAAGACCUUAGAUUGUACAUUUAUGUGAAAUAAUGAAAUAGUGAUCUAUUUCAUUAUUUUACCUAAAUGUACAAUUUUUUAUGACAAUCAUAAACUUUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGAAGUUGAACAAGACCUU--| U GU
AGAUUGUACAUUUA GUGAAAUAAUGAAAUA G
UUUAACAUGUAAAU CAUUUUAUUACUUUAU A
GUUUCAAAUACUAACAGUAUUU^ C CU
. 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Hvu-Novel-12_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UUUAUGUGAAAUAAUGAAAUA -21
Get sequence
|
|---|
| Mature sequence |
Hvu-Novel-12_3p |
| mirBase accession | None |
|---|
| Sequence |
29- UUUCAUUAUUUUACCUAAAUG -50
Get sequence
|
|---|
