| MirGeneDB ID | Hvu-Novel-1 |
|---|
| Family name |
HVU-NOVEL-1 (all species) |
|---|
| Species |
Freshwater-polyp (Hydra vulgaris) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
|
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| Node of Origin (locus) |
H. vulgaris
|
|---|
| Node of Origin (family) |
H. vulgaris
|
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Genome context
(Hm105_1.0) |
Sc4wPfr_1951: 2522-2571 [-]
|
|---|
| Seed |
AGAAAAU |
|---|
Precursor
(pre-Mir +30nt flank) |
AAGGUGUUAUUCUAUUUUUAGAUAAAGUUGUAGAAAAUUGUUAAUUUUGCAUUUCGUUGCAAAAUUUACAAUGUUCUACAACUUAUGUUAGCUGUAUUCAUCAACAAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGGUGUUAUUCUAUUUUUA- -| A U UU
GAUA AAGUUGUAGAA AUUGU AAUUUUGCA U
UUGU UUCAACAUCUU UAACA UUAAAACGU C
AGAAACAACUACUUAUGUCGA A^ G U UG
. 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Hvu-Novel-1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAGAAAAUUGUUAAUUUUGCA -21
Get sequence
|
|---|
| Star sequence |
Hvu-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
29- CAAAAUUUACAAUGUUCUACA -50
Get sequence
|
|---|
