| MirGeneDB ID | Hvu-Mir-3005 |
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| Family name |
MIR-3005 (all species) |
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| Seed |
GGAACCG |
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| Species |
Freshwater-polyp (Hydra vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
H. vulgaris
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| Node of Origin (family) |
H. vulgaris
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Genome context
(Hm105_1.0) |
Sc4wPfr_198: 1138053-1138103 [-]
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Precursor
(pre-Mir +30nt flank) |
CAUCUUCCAGAAAAGAUAAACUGAAAAUUUAGGAACCGGUCAGUCGCCAACCAUGUUGGUUGGUGGAUGAUUGAUUCCUAAAAUUUCAGUUAAUGCAUUCGAACUUGUUGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAUCUUCCAGAAAAGAUA--| A C GU AU
AACUGAAA UUUAGGAA CGGUCA CGCCAACC \
UUGACUUU AAAUCCUU GUUAGU GUGGUUGG G
CGUUGUUCAAGCUUACGUAA^ A A AG UU
. 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Hvu-Mir-3005_5p |
| mirBase accession | None |
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| Sequence |
0- AGGAACCGGUCAGUCGCCAACC -22
Get sequence
|
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| Co-mature sequence |
Hvu-Mir-3005_3p |
| mirBase accession | None |
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| Sequence |
29- UUGGUGGAUGAUUGAUUCCUAA -51
Get sequence
|
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