| MirGeneDB ID | Hvu-Mir-3003-P2 |
|---|
| Family name |
MIR-3003 (all species) |
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| Seed |
UAAAUGU |
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| Species |
Freshwater-polyp (Hydra vulgaris) |
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| MiRBase ID |
|
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| Paralogues |
Hvu-Mir-3003-P1
|
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| Orthologues |
|
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| Node of Origin (locus) |
H. vulgaris
|
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| Node of Origin (family) |
H. vulgaris
|
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Genome context
(Hm105_1.0) |
Sc4wPfr_90: 71712-71761 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUGACAUAAAAGCAAAUGCUAUUUAUAUCAUUACCAGUGUGCACAUUUAACAUUAUUGUUAAAUGUGCCAACUGGUAAUGAAAUAAAUACUGUUUUAUCUCUGCUUAUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGACAUAAAAGCAAAUGC--| A GU U
UAUUUAU UCAUUACCAGU GCACAUUUAACA U
AUAAAUA AGUAAUGGUCA CGUGUAAAUUGU A
UGUAUUCGUCUCUAUUUUGUC^ A AC U
. 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Hvu-Mir-3003-P2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UUACCAGUGUGCACAUUUAACA -22
Get sequence
|
|---|
| Mature sequence |
Hvu-Mir-3003-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
28- UUAAAUGUGCCAACUGGUAAUG -50
Get sequence
|
|---|
