| MirGeneDB ID | Gmo-Novel-8 |
|---|
| Family name |
GMO-NOVEL-8 (all species) |
|---|
| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
|
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| Node of Origin (locus) |
G. morhua
|
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| Node of Origin (family) |
G. morhua
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1263: 123004-123059 [+]
UCSC
Ensembl
|
|---|
| Seed |
GUGCAGA |
|---|
Precursor
(pre-Mir +30nt flank) |
CAAGAGUAAACCCACACACCAGAGCUAUAGUGUGCAGACUGUACACACUACAGCGCUACGCGUGUAGCUUGAACAGUCUGGACGCUAUAGCUCUUGGUCACCUCAAUACAAGCGGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAAGAGUAAACCCACAC- -| G A CA GCGC
ACC AGAGCUAUAGUGU CAGACUGU CA CUACA U
UGG UCUCGAUAUCGCA GUCUGACA GU GAUGU A
GGGCGAACAUAACUCCAC U^ G A UC GCGC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Gmo-Novel-8_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUGCAGACUGUACACACUACA -22
Get sequence
|
|---|
| Star sequence |
Gmo-Novel-8_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- UAGCUUGAACAGUCUGGACGCU -56
Get sequence
|
|---|
