| MirGeneDB ID | Gmo-Novel-6 |
|---|
| Family name |
GMO-NOVEL-6 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
|
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| Node of Origin (family) |
G. morhua
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1180: 71067-71126 [-]
UCSC
Ensembl
|
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| Seed |
UACCACG |
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Precursor
(pre-Mir +30nt flank) |
CUGUAGGUACACCACAUGAGCCUCAUGUUACCGUGGUGACACUGUAGGUACACCGCAUGAGCUUCCCGUUACCACGGUGUCACUGCCUGUACAUGAGCUUCACGUUCACCGCGUUGUGUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CUGUAGGUACACCACAU--| C UACC UG A C CGCAUG
GAG CUCAUGU G GUGACACUGU GGUA AC A
CUU GAGUACA C CACUGUGGCA CCAU UG G
UUGUGUUGCGCCACUUGCA^ C UGUC GU - - CCCUUC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Gmo-Novel-6_5p* |
| mirBase accession | None |
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| Sequence |
0- CCGUGGUGACACUGUAGGUACACC -24
Get sequence
|
|---|
| Mature sequence |
Gmo-Novel-6_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UUACCACGGUGUCACUGCCUGU -60
Get sequence
|
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