MirGeneDB 2.1

MirGeneDB ID

Gmo-Novel-5

Family name GMO-NOVEL-5 (all species)
Seed AGGACAU
Species Cod (Gadus morhua)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) G. morhua
Node of Origin (family) G. morhua
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
contig186083: 219-281 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAAAGAAAGCAUGACUAUAACACACUGAGAAGGACAUUAUUUAUUGAUAAUUUAUAUAUAUAUAUAAAUUAUCGUAAAUAAUUUGUCCUUCUCAGUGUGUAUGUACCCCAUCACGCGUGCAU
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Structure
        10        20          30          40        50        60
ACAAAGAAAGCAUGACUAUA--                 --|       U      UUAUAUA 
                      ACACACUGAGAAGGACA  UUAUUUAU GAUAAU       U
                      UGUGUGACUCUUCCUGU  AAUAAAUG CUAUUA       A
UACGUGCGCACUACCCCAUGUA                 UU^       -      AAUAUAU 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Novel-5_5p

mirBase accessionNone
Sequence
0- AAGGACAUUAUUUAUUGAUAAU -22
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Star sequence

Gmo-Novel-5_3p*

mirBase accessionNone
Sequence
40- UAUCGUAAAUAAUUUGUCCUUCU -63
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