| MirGeneDB ID | Gmo-Novel-4 |
|---|
| Family name |
GMO-NOVEL-4 (all species) |
|---|
| Species |
Cod (Gadus morhua) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
G. morhua
|
|---|
| Node of Origin (family) |
G. morhua
|
|---|
Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1503: 33136-33193 [-]
UCSC
Ensembl
|
|---|
| Seed |
AGAGUUU |
|---|
Precursor
(pre-Mir +30nt flank) |
GAGAGUUUGCAAUGUCUUGUGAUAUCCUGGAAGAGUUUGUCGACCGUGGGGCGUUAAAACAGUCGCCCCGCCGUCGACAAACUCUCCCAGGUUGGACAUUCUGUCUAUAGACUGUAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAGAGUUUGCAAUGUCU---| GA U A C GUUAA
UGU UA CCUGG AGAGUUUGUCGAC GUGGGGC A
ACA GU GGACC UCUCAAACAGCUG CGCCCCG A
AGAUGUCAGAUAUCUGUCUU^ G- U C C CUGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Gmo-Novel-4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAGAGUUUGUCGACCGUGGGGC -22
Get sequence
|
|---|
| Star sequence |
Gmo-Novel-4_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CCCGCCGUCGACAAACUCUCCC -58
Get sequence
|
|---|
