| MirGeneDB ID | Gmo-Novel-3 |
|---|
| Family name |
GMO-NOVEL-3 (all species) |
|---|
| Seed |
UUUGUCU |
|---|
| Species |
Cod (Gadus morhua) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
G. morhua
|
|---|
| Node of Origin (family) |
G. morhua
|
|---|
Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1774: 14608-14671 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AACGGGUUUAACACAAAAGCACUUGGAGGGAUUUGUCUGGACAUGUUCAGGACGAUUUACUGACUUGAAUGUCAUGACACGUUCAGGCAACGCUCCUCCAGACGCUGACGUGAUGCCCCCGUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AACGGGUUUAACACAAA- AC -|AU A U G CGAUUUACU
AGC UUGGAGG G UUGUCUGGAC UGU CA GA \
UCG GACCUCC C AACGGACUUG ACA GU CU G
AGUGCCCCCGUAGUGCAG CA U^GC C - A GUAAGUUCA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 on the 3p arm. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Gmo-Novel-3_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUUUGUCUGGACAUGUUCAGGA -22
Get sequence
|
|---|
| Star sequence |
Gmo-Novel-3_3p* |
| mirBase accession | None |
|---|
| Sequence |
43- AUGACACGUUCAGGCAACGCU -64
Get sequence
|
|---|
