| MirGeneDB ID | Gmo-Novel-1 |
|---|
| Family name |
GMO-NOVEL-1 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
|
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| Node of Origin (family) |
G. morhua
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
contig91536: 409-467 [-]
UCSC
Ensembl
|
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| Seed |
UAAGCUG |
|---|
Precursor
(pre-Mir +30nt flank) |
ACAACUGGCUAUUCAUCCUGUAUCGUGACGUUAAGCUGAGAAGUACAGACUGUUUGACCAACAUUAAGUCUGUACGUCUCAGCUUAACGUCACAAUGCACACAAUCACACAUGCUGCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACAACUGGCUAUUCAUCC--| C A GUUUGAC
UGUAU GUGACGUUAAGCUGAGA GUACAGACU \
ACGUA CACUGCAAUUCGACUCU CAUGUCUGA C
AACGUCGUACACACUAACAC^ A G AUUACAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 on the 3p arm. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Gmo-Novel-1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUAAGCUGAGAAGUACAGACU -21
Get sequence
|
|---|
| Star sequence |
Gmo-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- UCUGUACGUCUCAGCUUAACG -59
Get sequence
|
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