| MirGeneDB ID | Gmo-Mir-11935 |
|---|
| Family name |
MIR-11935 (all species) |
|---|
| Species |
Cod (Gadus morhua) |
|---|
| MiRBase ID |
gmo-mir-11935
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
G. morhua
|
|---|
| Node of Origin (family) |
G. morhua
|
|---|
Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_3477: 17415-17475 [+]
UCSC
Ensembl
|
|---|
| Seed |
CUCCAGA |
|---|
Precursor
(pre-Mir +30nt flank) |
UAACUGAGCUGGUCUCCCGACUGGACCAGGACCUGAGCUGGUCUGCAGACUAGACUAGGACCUAAGCAGGUCUCCAGACUGGACCAGGACCUGAGCUGGUCUACCGACUUGACCAGGAUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAACUGAGCUGGUCUCCC--| UG AC A AG UG C AGACUAGG
GAC G CAGG CCUG C GUCUG AGACU \
CUG C GUCC GGAC G CAGAC UCUGG A
UCUAGGACCAGUUCAGCCAU^ GU GA A CA GU C ACGAAUCC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Gmo-Mir-11935_5p* |
| mirBase accession | MIMAT0046069 |
|---|
| Sequence |
0- ACCUGAGCUGGUCUGCAGACU -21
Get sequence
|
|---|
| Mature sequence |
Gmo-Mir-11935_3p |
| mirBase accession | MIMAT0046070 |
|---|
| Sequence |
40- UCUCCAGACUGGACCAGGACC -61
Get sequence
|
|---|
