| MirGeneDB ID | Gmo-Mir-11278 |
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| Family name |
MIR-11278 (all species) |
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| Seed |
GGGAGAA |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-11278
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
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| Node of Origin (family) |
G. morhua
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_568: 33666-33727 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAUCAGUCCCCGCUGAUUAGGGGGGCCAAUGGGGAGAACCUGACUGGACCUCCAUACACAUCCGUGUGAGGUCCCAUCUUCUUGUCCUUCGCUGGCCCUCCUCUCUCCCUGCGGACUGGGCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAUCAGUCCCCGCUGAUU-- A -| G CCU CU CAUACAC
AGGGGGGCCA UG GGGA AA GA GGACCUC \
UCCUCCCGGU GC UCCU UU CU CCUGGAG A
ACGGGUCAGGCGUCCCUCUC C U^ G CUU AC UGUGCCU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Gmo-Mir-11278_5p |
| mirBase accession | MIMAT0044464 |
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| Sequence |
0- GGGGAGAACCUGACUGGACCUC -22
Get sequence
|
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| Star sequence |
Gmo-Mir-11278_3p* |
| mirBase accession | None |
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| Sequence |
39- GGUCCCAUCUUCUUGUCCUUCGC -62
Get sequence
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