| MirGeneDB ID | Gmo-Mir-11275 |
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| Family name |
MIR-11275 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-11275
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
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| Node of Origin (family) |
G. morhua
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_505: 10027-10083 [+]
UCSC
Ensembl
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| Seed |
CAGCCCC |
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Precursor
(pre-Mir +30nt flank) |
CCAGAAGGUCCAACAGCACCCAGGACCUGCCCAGCCCCCGACCCAACAGCCAGCCGGUCCUGCUGGCUGUUGGGUCAGGGGCGGAGAAGGCCCUGGGUAUGGGCACCAAGCCGCGGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CCAGAAGGUCCAACAGC-- A GC-| A C AGCCGG
ACCCAGG CCU CC GCCCC GACCCAACAGCC \
UGGGUCC GGA GG CGGGG CUGGGUUGUCGG U
GGGCGCCGAACCACGGGUA C AGA^ - A UCGUCC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Gmo-Mir-11275_5p |
| mirBase accession | MIMAT0044461 |
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| Sequence |
0- CCAGCCCCCGACCCAACAGCC -21
Get sequence
|
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| Co-mature sequence |
Gmo-Mir-11275_3p |
| mirBase accession | None |
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| Sequence |
36- CUGUUGGGUCAGGGGCGGAGA -57
Get sequence
|
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