| MirGeneDB ID | Gmo-Mir-11275 |
|---|
| Family name |
MIR-11275 (all species) |
|---|
| Seed |
CAGCCCC |
|---|
| Species |
Cod (Gadus morhua) |
|---|
| MiRBase ID |
gmo-mir-11275
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
G. morhua
|
|---|
| Node of Origin (family) |
G. morhua
|
|---|
Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_505: 10027-10083 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCAGAAGGUCCAACAGCACCCAGGACCUGCCCAGCCCCCGACCCAACAGCCAGCCGGUCCUGCUGGCUGUUGGGUCAGGGGCGGAGAAGGCCCUGGGUAUGGGCACCAAGCCGCGGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCAGAAGGUCCAACAGC-- A GC-| A C AGCCGG
ACCCAGG CCU CC GCCCC GACCCAACAGCC \
UGGGUCC GGA GG CGGGG CUGGGUUGUCGG U
GGGCGCCGAACCACGGGUA C AGA^ - A UCGUCC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Gmo-Mir-11275_5p |
| mirBase accession | MIMAT0044461 |
|---|
| Sequence |
0- CCAGCCCCCGACCCAACAGCC -21
Get sequence
|
|---|
| Co-mature sequence |
Gmo-Mir-11275_3p |
| mirBase accession | None |
|---|
| Sequence |
36- CUGUUGGGUCAGGGGCGGAGA -57
Get sequence
|
|---|
