| MirGeneDB ID | Gmo-Mir-11223 |
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| Family name |
MIR-11223 (all species) |
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| Seed |
AUAGUCU |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-11223
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
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| Node of Origin (family) |
G. morhua
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1549: 79250-79310 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCAGGGUAAUGAGACACACCCCCAUCCUUCUAUAGUCUGUAGACGCGUCAGGGUAAUGAGACACACCCCCUGUCCCUCUAUAGUCUGUAGACGUGUCAGGGUAAUGAGACACACUGCCGCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UCAGGGUAAUGAGACAC-- C--| CCU U CGCGU UAAUGA
ACCC CAU UCUAUAG CUGUAGA CAGGG G
UGGG GUG AGAUGUC GAUAUCU GUCCC A
CCGCCGUCACACAGAGUAA ACU^ C-- U CCCU- CCACAC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Gmo-Mir-11223_5p |
| mirBase accession | MIMAT0044392 |
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| Sequence |
0- UAUAGUCUGUAGACGCGUCAGGG -23
Get sequence
|
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| Star sequence |
Gmo-Mir-11223_3p* |
| mirBase accession | MIMAT0044393 |
|---|
| Sequence |
39- CUGUCCCUCUAUAGUCUGUAGA -61
Get sequence
|
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