| MirGeneDB ID | Gmo-Mir-11217 |
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| Family name |
MIR-11217 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-11217
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
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| Node of Origin (family) |
G. morhua
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1351: 44808-44863 [+]
UCSC
Ensembl
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| Seed |
UGGCCUG |
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Precursor
(pre-Mir +30nt flank) |
CAUCUGCUUGCUACCCCUGGAGUCAGCCUGCUGCAGGCUGCCCAGGCCAUCCUUCGCCUGUAAGAUGGCCUGGUCAGCCUGCUGCAGGCUGCCCAGGUCAUCCUCCGCCUGUAAGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAUCUGCUUGCUACCCC----| A U U C CUUCG
UGG G CAGCCUGC GCAGGCUG CCAGGCCAUC C
ACC C GUCGGACG CGUCCGAC GGUCCGGUAG C
AGAAUGUCCGCCUCCUACUGG^ - - U U AAUGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Gmo-Mir-11217_5p* |
| mirBase accession | MIMAT0044385 |
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| Sequence |
0- CUGCAGGCUGCCCAGGCCAUCC -22
Get sequence
|
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| Mature sequence |
Gmo-Mir-11217_3p |
| mirBase accession | None |
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| Sequence |
34- AUGGCCUGGUCAGCCUGCUGCA -56
Get sequence
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