| MirGeneDB ID | Gmo-Mir-11183 |
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| Family name |
MIR-11183 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-11183
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
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| Node of Origin (family) |
G. morhua
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_2047: 90781-90832 [+]
UCSC
Ensembl
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| Seed |
CCCAGGU |
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Precursor
(pre-Mir +30nt flank) |
CCCCACGUCCCGUGGUUGGCUGCCGUUGGGCCCCAGGUAGAGCGCCUUCACCGCGGACGCUGAAGGAGCUCUACCUGGGGCCCAACGGCUCCCUCACUGCUCAGCAACACCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CCCCACGUCCCGUGGUU--| CU G C GC
GG GCCGUUGGGCCCCAGGUAGAGC CCUUCA C G
CC CGGCAACCCGGGGUCCAUCUCG GGAAGU G G
UCCACAACGACUCGUCACU^ CU A C CA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
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| Mature sequence |
Gmo-Mir-11183_5p |
| mirBase accession | MIMAT0044169 |
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| Sequence |
0- CCCCAGGUAGAGCGCCUUCACC -22
Get sequence
|
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| Star sequence |
Gmo-Mir-11183_3p* |
| mirBase accession | MIMAT0044170 |
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| Sequence |
30- UGAAGGAGCUCUACCUGGGGCC -52
Get sequence
|
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