| MirGeneDB ID | Ete-Novel-6 |
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| Family name |
ETE-NOVEL-6 (all species) |
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| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. telfairi
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| Node of Origin (family) |
E. telfairi
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Genome context
(echTel2) |
JH980433: 1810881-1810942 [-]
UCSC
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| Seed |
CAGAGCG |
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Precursor
(pre-Mir +30nt flank) |
GAUUCCAGAACUCUCUUUGACAAGGUGGGGCGGGGCUCUCCUAGGUCUGGGCUCUGGCAAAAUUGGGGAGCCAGAGCGGGAGGAGCCUCAUCCCCCACCCUGCGCUUCCGCAGAAACGGUGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAUUCCAGAACUCUCUUU- A A C-- -| AGG GCUCUGGCA
G CA GGUGGGG GGGGCU CUCCU UCUGG A
C GU CCACCCC CUCCGA GAGGG AGACC A
CGUGGCAAAGACGCCUUCG - C CUA G^ CG- GAGGGGUUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a one nt difference between the genomic read and the actual 3p read from the small RNA library (CUCUCAGGCUCGUCAGCCCGUG). |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Ete-Novel-6_5p* |
| mirBase accession | None |
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| Sequence |
0- CGGGGCUCUCCUAGGUCUGGGC -22
Get sequence
|
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| Mature sequence |
Ete-Novel-6_3p |
| mirBase accession | None |
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| Sequence |
40- CCAGAGCGGGAGGAGCCUCAUC -62
Get sequence
|
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