| MirGeneDB ID | Ete-Novel-4 |
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| Family name |
ETE-NOVEL-4 (all species) |
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| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. telfairi
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| Node of Origin (family) |
E. telfairi
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Genome context
(echTel2) |
JH980335: 17761038-17761101 [-]
UCSC
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| Seed |
GAGGUAU |
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Precursor
(pre-Mir +30nt flank) |
AUGUUUGUUUGCCAACUGCGCCCUCCCCUGUGAGGUAUUUUUGUAAGCGCCAUUAUAAAAUUUGGCACUGUGGUGCUUACGAAAAUACCUUGGCGGUGGGGGUGCUUAACCGUUUGCGCAACCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AUGUUUGUUUGCCAACU-- - -| GU UUAUAAAA
GCGCCCUC CC CU GAGGUAUUUUUGUAAGCGCCA U
CGUGGGGG GG GG UUCCAUAAAAGCAUUCGUGGU U
CCCAACGCGUUUGCCAAUU U C^ -- GUCACGGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Mature sequence |
Ete-Novel-4_5p |
| mirBase accession | None |
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| Sequence |
0- UGAGGUAUUUUUGUAAGCGCCA -22
Get sequence
|
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| Star sequence |
Ete-Novel-4_3p* |
| mirBase accession | None |
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| Sequence |
42- GUGCUUACGAAAAUACCUUGGC -64
Get sequence
|
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