| MirGeneDB ID | Esc-Novel-71 |
|---|
| Family name |
ESC-NOVEL-71 (all species) |
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| Seed |
GCGAACA |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. scolopes
|
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| Node of Origin (family) |
E. scolopes
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-71_pre_SRIE01048366.1:7365923-7366184: 101-162 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUGUGGAUUAACUUUGACCGCAGACUUCUCACUGUCACCCCUUGUUGCUUCCCGUGUGCUCUACCCAGAUGCGAACAGGAUGUGAGCAGUGAGUUAGCCAGCGGAAGUGACAUCAGAUUUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGUGGAUUAACUUUGA- AGA U- - CC -| U CCGUGUG
CCGC CU CUCACUG UCAC CUUGUU GC UC C
GGCG GA GAGUGAC AGUG GGACAA CG AG U
CCUUUAGACUACAGUGAA ACC UU G UA G^ U ACCCAUC
120 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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|
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| Star sequence |
Esc-Novel-71_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACUGUCACCCCUUGUUGCUUC -21
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-71_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGCGAACAGGAUGUGAGCAGUGA -62
Get sequence
|
|---|
