| MirGeneDB ID | Efe-Novel-4 |
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| Family name |
EFE-NOVEL-4 (all species) |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
E. fetida
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Genome context
(Efe_combined) |
Efet.01.657955: 785-845 [-]
|
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| Seed |
GAGGAGG |
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Precursor
(pre-Mir +30nt flank) |
GUACACAGCACAGGCUUACCAAACGGAGCUUGAGGAGGACACUGUGCCUGAGAUACAGAGGACUAAUCUGGGUAAUGUUGUGCUCCUCCUGCUCAGUUUAGGAAUUCGAGACCUCAUGAAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUACACAGCACAGGCUUA- - G UU G CUG-| G UACAGA
CC AAAC GAGC GAGGAG ACA UGCCU AGA \
GG UUUG CUCG CUCCUC UGU AUGGG UCU G
GAAGUACUCCAGAGCUUAA A A UC G UGUA^ - AAUCAG
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Efe-Novel-4_5p |
| mirBase accession | None |
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| Sequence |
0- UGAGGAGGACACUGUGCCUGAGA -23
Get sequence
|
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| Star sequence |
Efe-Novel-4_3p* |
| mirBase accession | None |
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| Sequence |
38- UGGGUAAUGUUGUGCUCCUCCUG -61
Get sequence
|
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