| MirGeneDB ID | Efe-Novel-3 |
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| Family name |
EFE-NOVEL-3 (all species) |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
E. fetida
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Genome context
(Efe_combined) |
Efet.01.141380: 5618-5675 [-]
|
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| Seed |
AUGUGAC |
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Precursor
(pre-Mir +30nt flank) |
GGCAAAGGUGGUCGAUAGCGCAGCCAUUCCUCUGAGUCUGGCGUCACAUACAUGUAUUAAGGAAUGUAUGUGACACCAGAAUCAGUGGAAGUAUAUCNNNNNNNNNNNNNNNNNNNNN
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGCAAAGGUGGUCGAUAGCGCAGCCA--| U G C UGUAU
UUCC CUGA UCUGG GUCACAUACA U
AAGG GACU AGACC CAGUGUAUGU A
NNNNNNNNNNNNNNNNNNNNNCUAUAUG^ U A A AAGGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
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| Star sequence |
Efe-Novel-3_5p* |
| mirBase accession | None |
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| Sequence |
0- UCUGAGUCUGGCGUCACAUACA -22
Get sequence
|
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| Mature sequence |
Efe-Novel-3_3p |
| mirBase accession | None |
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| Sequence |
36- UAUGUGACACCAGAAUCAGUGG -58
Get sequence
|
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