| MirGeneDB ID | Efe-Mir-2693-P2 |
|---|
| Family name |
MIR-2693 (all species) |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Efe-Mir-2693-P1
|
|---|
| Orthologues |
Cte-Mir-2693
|
|---|
| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Sedentaria
|
|---|
Genome context
(Efe_combined) |
Efet.01.511636: 2808-2868 [-]
|
|---|
| Seed |
GAAAUUG |
|---|
Precursor
(pre-Mir +30nt flank) |
UGCCCGGAAUCACUGCACGCCACUCGAUUCAGAAAUUGUACACUAGACUAGUUCGCCGUUAACUACCCCUAGUCUAGUCUACAGUUCAUGGAUCUGGUGACGAAGUCAUCGCCAGUGGGCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGCCCGGAAUCACUGCA--| C C GA C UUCGCCGU
CG CACU GAUUCA AAUUGUA ACUAGACUAG \
GC GUGG CUAGGU UUGACAU UGAUCUGAUC U
GCGGGUGACCGCUACUGAA^ A U AC C CCCAUCAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Efe-Mir-2693-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGAAAUUGUACACUAGACUAGU -22
Get sequence
|
|---|
| Star sequence |
Efe-Mir-2693-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- UAGUCUAGUCUACAGUUCAUGG -61
Get sequence
|
|---|
