| MirGeneDB ID | Efe-Mir-1987 |
|---|
| Family name |
MIR-1987 (all species) |
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| Seed |
CUGCCAG |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Cte-Mir-1987
|
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| Node of Origin (locus) |
Annelida
|
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| Node of Origin (family) |
Annelida
|
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Genome context
(Efe_combined) |
Efet.01.207197: 888-947 [-]
|
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Precursor
(pre-Mir +30nt flank) |
AGAAAGCUCCUUGAUCGGAUUAGCUAUCGCAGAGCCUUAUGUACGGGCAUACUGUAAUCAAUCAAACCACUGCCAGACGUAAGGUUUUGCGUUUAGCCUAUCACGGAACAGCAGCUGCGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGAAAGCUCCUUGAUCG- UA U-| ACG UACUGUAAUC
GAU GCUA CGCAGAGCCUUAUGU GGCA \
CUA CGAU GCGUUUUGGAAUGCA CCGU A
UGCGUCGACGACAAGGCA UC UU^ GA- CACCAAACUA
. 110 100 90 80 70 |
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| Deep sequencing |
|
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| Comment | A star has not yet been recorded from this miRNA but it is deeply conserved across annelids. |
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-1987_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGAGCCUUAUGUACGGGCAUACU -23
Get sequence
|
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| Mature sequence |
Efe-Mir-1987_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- ACUGCCAGACGUAAGGUUUUGC -60
Get sequence
|
|---|
