| MirGeneDB ID | Ebu-Novel-1 |
|---|
| Family name |
EBU-NOVEL-1 (all species) |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
E. burgeri
|
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Genome context
(Eburgeri_3) |
FYBX02010348.1: 152022-152080 [-]
UCSC
Ensembl
|
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| Seed |
GAUGGAA |
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Precursor
(pre-Mir +30nt flank) |
UCGUCUCGUCCAGAUGUCAGAAUACCGUGAAGGUUCGGGUCCAUUCCAUCAGCUCAGUUUUGGUUGUUGAUGGAAAGCUCCGAGUCUCCUCGUUCUCUCUGUCUCUCGUCGAUCAGUUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCGUCUCGUCCAGAUGU- AUAC- UGA GU -| CCA UCAGU
CAGA CG AG UCGG GU UUCCAUCAGC U
GUCU GC UC AGCC CG AAGGUAGUUG U
GUUGACUAGCUGCUCUCU CUCUU UCC UG U^ A-- UUGGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ebu-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGUUCGGGUCCAUUCCAUCAGC -23
Get sequence
|
|---|
| Mature sequence |
Ebu-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UGAUGGAAAGCUCCGAGUCUCC -59
Get sequence
|
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