| MirGeneDB ID | Ebu-Mir-196-P5 |
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| Family name |
MIR-196 (all species) |
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| Seed |
AGGUAGU |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
Ebu-Mir-196-P6
|
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| Orthologues |
Cin-Mir-196
|
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Olfactores
|
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Genome context
(Eburgeri_3) |
FYBX02009525.1: 1711837-1711894 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GACAUCUUCAGAAGAUGAUUGGUUGUGAUUUAGGUAGUUUCAUGUUGUUGGGAGGUCGACAAUGUUCGACAGCAAGAAACUGCCUUGAUCAUACCAUUCACUACCUGCGAGCAACCGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GACAUCUUCAGAAGAUGAU---| U U A AGGUC
UGGU GUGAUU AGGUAGUUUC UGUUGUUGGG G
ACCA UACUAG UCCGUCAAAG ACGACAGCUU A
CGCCAACGAGCGUCCAUCACUU^ - U A GUAAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ebu-Mir-196-P5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
|
|---|
| Star sequence |
Ebu-Mir-196-P5_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- CGACAGCAAGAAACUGCCUUGA -58
Get sequence
|
|---|
