MirGeneDB 2.1
MirGeneDB ID

Ebu-Mir-190-P6

Family name MIR-190 (all species)
Seed GAUAUGU
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-190-P5 
Orthologues Aae-Mir-190  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bla-Mir-190  Bpl-Mir-190  Cbr-Mir-190  Cel-Mir-190  Cgi-Mir-190  Cte-Mir-190  Dan-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dpu-Mir-190  Dsi-Mir-190  Dya-Mir-190  Esc-Mir-190  Hme-Mir-190  Isc-Mir-190  Npo-Mir-190  Obi-Mir-190  Ovu-Mir-190  Pfl-Mir-190  Pmi-Mir-190  Sko-Mir-190  Tca-Mir-190  Xbo-Mir-190 
Node of Origin (locus) E. burgeri
Node of Origin (family) Bilateria
Genome context
(Eburgeri_3)		 FYBX02009649.1: 2701665-2701725 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGGAGAAUUGGUAAUGCUUAACAUCGUCUGAUAUGUUUGGUAUAUAUGGUUGUGUGUCAUUUACCAACUGUAUAUCAAACAUAUGGUCACAGUGUUUUGCACUUUCAGCAUACGUGCAG
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Structure
        10          20          30        40          50        
CUUGGAGAAUUGGUAAU--  UU     C  --  G                --|  UUGUGU 
                   GC  AACAU GU  CU AUAUGUUUGGUAUAUA  UGG      G
                   CG  UUGUG CA  GG UAUACAAACUAUAUGU  ACC      U
GACGUGCAUACGACUUUCA  UU     A  CU  -                CA^  AUUUAC 
 .       110       100        90         80        70        60
Deep sequencing
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CommentThere is a single nucleotide mismatch in the 5p arm between the genome (Eptatretus) and the source of the RNA reads(Myxine).
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Ebu-Mir-190-P6_5p
mirBase accessionNone
Sequence 
0- UGAUAUGUUUGGUAUAUAUGGU -22
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Star sequence

Ebu-Mir-190-P6_3p*
mirBase accessionNone
Sequence 
38- ACUGUAUAUCAAACAUAUGGUCA -61
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