Mir-190-P6

MirGeneDB ID

Ebu-Mir-190-P6

Family name

MIR-190 (all species)

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-190-P5

Orthologues

Aae-Mir-190 Aga-Mir-190 Agr-Mir-190 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bko-Mir-190 Bla-Mir-190 Bpl-Mir-190 Cbr-Mir-190 Cel-Mir-190 Cte-Mir-190 Dan-Mir-190 Dlo-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dpu-Mir-190 Dsi-Mir-190 Dya-Mir-190 Eba-Mir-190 Egr-Mir-190 Esc-Mir-190 Gpa-Mir-190 Gsa-Mir-190 Hme-Mir-190 Hmi-Mir-190 Hru-Mir-190 Isc-Mir-190 Mgi-Mir-190 Mom-Mir-190 Npo-Mir-190 Obi-Mir-190 Ofu-Mir-190 Ovu-Mir-190 Pau-Mir-190 Pca-Mir-190 Pdu-Mir-190 Pfl-Mir-190 Pmi-Mir-190 Pve-Mir-190 Rph-Mir-190 Sko-Mir-190 Sma-Mir-190 Snu-Mir-190 Tca-Mir-190 Tur-Mir-190 War-Mir-190 Xbo-Mir-190

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Bilateria

Genome context
(Eburgeri_3)

FYBX02009649.1: 2701665-2701725 [+] UCSC Ensembl

Seed

GAUAUGU

Precursor
(pre-Mir +30nt flank)

CUUGGAGAAUUGGUAAUGCUUAACAUCGUCUGAUAUGUUUGGUAUAUAUGGUUGUGUGUCAUUUACCAACUGUAUAUCAAACAUAUGGUCACAGUGUUUUGCACUUUCAGCAUACGUGCAG

Get precursor sequence

Structure

        10          20          30        40          50        
CUUGGAGAAUUGGUAAU--  UU     C  --  G                --|  UUGUGU 
                   GC  AACAU GU  CU AUAUGUUUGGUAUAUA  UGG      G
                   CG  UUGUG CA  GG UAUACAAACUAUAUGU  ACC      U
GACGUGCAUACGACUUUCA  UU     A  CU  -                CA^  AUUUAC 
 .       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

Comment

There is a single nucleotide mismatch in the 5p arm between the genome (Eptatretus) and the source of the RNA reads(Myxine).

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Ebu-Mir-190-P6_5p

mirBase accession

None

Sequence

0- UGAUAUGUUUGGUAUAUAUGGU -22

Get sequence

Star sequence

Ebu-Mir-190-P6_3p*

mirBase accession

None

Sequence

38- ACUGUAUAUCAAACAUAUGGUCA -61

Get sequence