MirGeneDB 3.0

MirGeneDB ID

Ebu-Mir-15-P1e

Family name MIR-15 (all species)
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-15-P2f 
Orthologues Cin-Mir-15-P1 
Node of Origin (locus) E. burgeri
Node of Origin (family) Olfactores
Genome context
(Eburgeri_3)
FYBX02009928.1: 3667616-3667677 [+] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)
GAGUACACCGGAGACUGCCGGGUUUCCCUGUAGCAGCACGUCAUGGUUUGUAAAGAGGCGGAGGCAGUUGCAGGCCUGGCGCUGCUGCCUCGGGGCAGCUUGGCUUAUCAACACUCGGUGAA
Get precursor sequence
Structure
        10          20        30         40        50        60
GAGUACACCGGAGACUG--       U     UA      -|    U        AAGAGGC 
                   CCGGGUU CCCUG  GCAGCA CGUCA GGUUUGUA       G
                   GGUUCGA GGGGC  CGUCGU GCGGU CCGGACGU       G
AAGUGGCUCACAACUAUUC       C     UC      C^    -        UGACGGA 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ebu-Mir-15-P1e_5p

mirBase accessionNone
Sequence
0- UAGCAGCACGUCAUGGUUUGUA -22
Get sequence
Star sequence

Ebu-Mir-15-P1e_3p*

mirBase accessionNone
Sequence
40- CAGGCCUGGCGCUGCUGCCUCG -62
Get sequence