MirGeneDB ID | Ebu-Mir-15-P1e |
Family name |
MIR-15 (all species) |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-15-P2f
|
Orthologues |
Cin-Mir-15-P1
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Olfactores
|
Genome context (Eburgeri_3) |
FYBX02009928.1: 3667616-3667677 [+]
UCSC
Ensembl
|
Seed |
AGCAGCA |
Precursor (pre-Mir +30nt flank) |
GAGUACACCGGAGACUGCCGGGUUUCCCUGUAGCAGCACGUCAUGGUUUGUAAAGAGGCGGAGGCAGUUGCAGGCCUGGCGCUGCUGCCUCGGGGCAGCUUGGCUUAUCAACACUCGGUGAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAGUACACCGGAGACUG-- U UA -| U AAGAGGC
CCGGGUU CCCUG GCAGCA CGUCA GGUUUGUA G
GGUUCGA GGGGC CGUCGU GCGGU CCGGACGU G
AAGUGGCUCACAACUAUUC C UC C^ - UGACGGA
120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ebu-Mir-15-P1e_5p |
mirBase accession | None |
Sequence |
0- UAGCAGCACGUCAUGGUUUGUA -22
Get sequence
|
Star sequence |
Ebu-Mir-15-P1e_3p* |
mirBase accession | None |
Sequence |
40- CAGGCCUGGCGCUGCUGCCUCG -62
Get sequence
|