MirGeneDB 2.1

MirGeneDB ID

Dpu-Novel-2

Family name DPU-NOVEL-2 (all species)
Seed CUGGGUU
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) Daphnia
Node of Origin (family) Daphnia
Genome context
(Daphnia_pulex.V1.0)
DAPPUscaffold_24: 361300-361359 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCUGCAGAAAAUUUGAUUUAGUUUGAGUCCAGUUUUACAUACCCCAUAGAAUGUAUUUAAUAUCUCUGGGUUAUGAUUAAGACUGGGCAAAAGCUAUUUGCUACAACAUGUAAUGAAU
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Structure
        10        20          30          40        50        
UGCCUGCAGAAAAUUUGAUU--      GA           --|   C    U   AUGUA 
                      UAGUUU  GUCCAGUUUUA  CAUA CCCA AGA     U
                      AUCGAA  CGGGUCAGAAU  GUAU GGGU UCU     U
UAAGUAAUGUACAACAUCGUUU      AA           UA^   U    C   AUAAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Dpu-Novel-2_5p*

mirBase accessionNone
Sequence
0- CCAGUUUUACAUACCCCAUAGA -22
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Mature sequence

Dpu-Novel-2_3p

mirBase accessionNone
Sequence
36- UCUGGGUUAUGAUUAAGACUGGGC -60
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