| MirGeneDB ID | Cte-Mir-2708 |
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| Family name |
MIR-2708 (all species) |
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| Species |
Polychaete worm (Capitella teleta) |
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| MiRBase ID |
cte-mir-2708
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. teleta
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| Node of Origin (family) |
C. teleta
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Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_1308: 9126-9184 [-]
Ensembl
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| Seed |
GAAGAUU |
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Precursor
(pre-Mir +30nt flank) |
CAUAAAGAACAAUUAGUUUCGUGCCGCUCGCCAAUUUUAUUAAAUAUUCUAGGUGCUUUGAAACAAUAGAAGAUUUAAUAAGAUUGGGGAGUUGCUCGACUCGACGUCGAUCAGUCUAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAUAAAGAACAAUUAGUU--| U C G A GGUGCUU
UCG GC GCUC CCAAUUUUAUUAAAU UUCUA \
AGC CG UGAG GGUUAGAAUAAUUUA AAGAU U
UAUCUGACUAGCUGCAGCUC^ U U G G AACAAAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Cte-Mir-2708_5p* |
| mirBase accession | None |
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| Sequence |
0- CCAAUUUUAUUAAAUAUUCUAG -22
Get sequence
|
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| Mature sequence |
Cte-Mir-2708_3p |
| mirBase accession | MIMAT0013576 |
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| Sequence |
37- AGAAGAUUUAAUAAGAUUGGGG -59
Get sequence
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