| MirGeneDB ID | Cte-Mir-2702 |
|---|
| Family name |
MIR-2702 (all species) |
|---|
| Species |
Polychaete worm (Capitella teleta) |
|---|
| MiRBase ID |
cte-mir-2702
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. teleta
|
|---|
| Node of Origin (family) |
C. teleta
|
|---|
Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_140: 52385-52444 [-]
Ensembl
|
|---|
| Seed |
UUCAGGU |
|---|
Precursor
(pre-Mir +30nt flank) |
GAAGAGAAGACAAUUUGUGUUUAAGCGCUCUAUAUUUCCAUUACCUGAAUGCUUUAUAACGGCACCACGUUCAGGUAAUAGAAAUGUACAGUGCUUGUACAAAUCUCGACAGACAUCUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAAGAGAAGACAAUUUG--| U C C CUUUAUA
UGU UAAGCGCU UAUAUUUC AUUACCUGAAUG A
ACA GUUCGUGA AUGUAAAG UAAUGGACUUGC C
ACUCUACAGACAGCUCUAA^ U C A ACCACGG
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Cte-Mir-2702_5p* |
| mirBase accession | MIMAT0013565 |
|---|
| Sequence |
0- UAUAUUUCCAUUACCUGAAUGC -22
Get sequence
|
|---|
| Mature sequence |
Cte-Mir-2702_3p |
| mirBase accession | MIMAT0013566 |
|---|
| Sequence |
38- GUUCAGGUAAUAGAAAUGUACA -60
Get sequence
|
|---|
