| MirGeneDB ID | Cte-Mir-2701 |
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| Family name |
MIR-2701 (all species) |
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| Species |
Polychaete worm (Capitella teleta) |
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| MiRBase ID |
cte-mir-2701
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. teleta
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| Node of Origin (family) |
C. teleta
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Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_1278: 13412-13470 [+]
Ensembl
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| Seed |
CCGCAUU |
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Precursor
(pre-Mir +30nt flank) |
ACCUUGGGUUCUCUGAAUGACCUUGCAUUGCCCGCAUUGCCAUCGGCGCCUGGUCUGAUUUCACACAGGUGUCAAUGUCAAAGCGUACAAUGUGACGUCAAUUCGCUUCAUUUAUAUGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
ACCUUGGGUUCUCUGAA--| C UG CC A C C GUCUGA
UGAC U CAUUG CGC UUG CAU GGCGCCUG \
ACUG A GUAAC GCG AAC GUA CUGUGGAC U
AGUAUAUUUACUUCGCUUA^ C GU AU A U A ACACUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Cte-Mir-2701_5p |
| mirBase accession | MIMAT0013564 |
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| Sequence |
0- CCCGCAUUGCCAUCGGCGCCUG -22
Get sequence
|
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| Star sequence |
Cte-Mir-2701_3p* |
| mirBase accession | None |
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| Sequence |
37- GGUGUCAAUGUCAAAGCGUACA -59
Get sequence
|
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