| MirGeneDB ID | Cte-Mir-1999 |
|---|
| Family name |
MIR-1999 (all species) |
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| Species |
Polychaete worm (Capitella teleta) |
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| MiRBase ID |
cte-mir-1999
|
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| Paralogues |
|
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| Orthologues |
Dgr-Mir-1999
Efe-Mir-1999-P1
Efe-Mir-1999-P2
Pdu-Mir-1999
|
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| Node of Origin (locus) |
Pleistoannelida
|
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| Node of Origin (family) |
Pleistoannelida
|
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Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_384: 79440-79501 [-]
Ensembl
|
|---|
| Seed |
GUAGCCA |
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Precursor
(pre-Mir +30nt flank) |
AGAUCGGGAUUCCAUAUGCCAUCGGAGGCGGGCUUAAUCUUUGGCUAAAUAGUGAACACAAUUCAAGCCUAUGUAGCCAAAGUUUGGGUCCGUCUCUAUGGCUACCUCAUCGGAACUCCACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGAUCGGGAUUCCAUAU---| C U A GUGAACAC
GCCAU GGAGGCGGGCUUAA CUUUGGCUA AUA A
CGGUA UCUCUGCCUGGGUU GAAACCGAU UAU A
ACACCUCAAGGCUACUCCAU^ - U G CCGAACUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Cte-Mir-1999_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGCUUAAUCUUUGGCUAAAUA -21
Get sequence
|
|---|
| Mature sequence |
Cte-Mir-1999_3p |
| mirBase accession | MIMAT0009710 |
|---|
| Sequence |
41- UGUAGCCAAAGUUUGGGUCCG -62
Get sequence
|
|---|
