| MirGeneDB ID | Cpo-Mir-1379 |
|---|
| Family name |
MIR-1379 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-1379
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| Paralogues |
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| Orthologues |
Eca-Mir-1379
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
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Genome context
(cavPor3) |
scaffold_13: 2582941-2582997 [+]
UCSC
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| Seed |
ACGGGCU |
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Precursor
(pre-Mir +30nt flank) |
GACGAGGGGACCUUCAGGGAGCCCACGGGCUCAGGCUCUCAGCCCGAGCCGUGUUCUUCAGACGGGCACGGGCUGCAGCGCCAACGCCCGUGGGCCCCCAGGGCCAGGCCAACGCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GACGAGGGGACCUUCAG-- A UCA U -| A GUGUUC
GG GCCCACGGGC GGC CU CAGCCCG GCC U
CC CGGGUGCCCG CCG GA GUCGGGC CGG U
CUCGCAACCGGACCGGGAC C CAA C C^ A GCAGAC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Star sequence |
Cpo-Mir-1379_5p* |
| mirBase accession | MIMAT0047423 |
|---|
| Sequence |
0- UCAGGCUCUCAGCCCGAGCC -20
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-1379_3p |
| mirBase accession | MIMAT0047424 |
|---|
| Sequence |
36- CACGGGCUGCAGCGCCAACGC -57
Get sequence
|
|---|
