| MirGeneDB ID | Cpo-Mir-12079 |
|---|
| Family name |
MIR-12079 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-12079
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. porcellus
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| Node of Origin (family) |
C. porcellus
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Genome context
(cavPor3) |
scaffold_25: 8963913-8963973 [-]
UCSC
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| Seed |
CAUGGGA |
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Precursor
(pre-Mir +30nt flank) |
AGCUCUACCCAGUGGUGGCUACGGACACAGCACACUCUCUGAACCCACUGCUCAUCUGCAUAGAUCGUGACAUGGGAUUGGAGAGUGACCUGGGUCAUAGUCGUGUGGUCUAUUAACAUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGCUCUACCCAGUGGUG---| CG A CA UG A C CUCAUCUGC
GCUA GAC CAG CACUCUC A CCCA UG A
UGAU CUG GUC GUGAGAG U GGGU AC U
GGUACAAUUAUCUGGUGUGC^ A- G CA GU A - AGUGCUAGA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Star sequence |
Cpo-Mir-12079_5p* |
| mirBase accession | MIMAT0047461 |
|---|
| Sequence |
0- CACACUCUCUGAACCCACUGCU -22
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-12079_3p |
| mirBase accession | MIMAT0047462 |
|---|
| Sequence |
39- ACAUGGGAUUGGAGAGUGACCU -61
Get sequence
|
|---|
