MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-12076

Family name MIR-12076 (all species)
Seed CUGGCCC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-12076
Paralogues
Orthologues
Node of Origin (locus) C. porcellus
Node of Origin (family) C. porcellus
Genome context
(cavPor3)
scaffold_3: 1597129-1597188 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AUAAGAUUCUUUCCCUUGCCCAUCCCGGCCCCUGGCCCGGCAGUGUUUGGCUCUGUCUGUGUGAACCUCAAGCUCUGCCUGACCAGAGGGCCGGGGUGGUGUCACCCUGAGGUGUCCCCU
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Structure
        10          20        30         40        50         
AUAAGAUUCUUUCCCUU-  -            -|   CCC     U      CUCUGUCU 
                  GC CCAUCCCGGCCC CUGG   GGCAG GUUUGG        \
                  UG GGUGGGGCCGGG GACC   CCGUC CGAACU        G
UCCCCUGUGGAGUCCCAC  U            A^   AGU     U      CCAAGUGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
To
Mature sequence

Cpo-Mir-12076_5p

mirBase accessionMIMAT0047453
Sequence
0- CCUGGCCCGGCAGUGUUUGGC -21
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Star sequence

Cpo-Mir-12076_3p*

mirBase accessionMIMAT0047454
Sequence
38- CAAGCUCUGCCUGACCAGAGGG -60
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