MirGeneDB 2.1

MirGeneDB ID

Cmi-Novel-5

Family name CMI-NOVEL-5 (all species)
Seed UGGCAAA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. milii
Node of Origin (family) C. milii
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635871.1: 9629821-9629878 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGGAAUCUCUUGAUUUGUAGUUCCCAGUUUGGCAAAGUCUGAAAAAAGACUUGCUUGACAUGGUAUUUUUUUGCACUUUGUCAGUUUGGGUUCGCACUCUACUAACCAACCAAAAG
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Structure
        10           20        30        40        50        
AGAGGAAUCUCUUGAUU---|  AGUU     U          C        G   UGCU 
                    UGU    CCCAG UUGGCAAAGU UGAAAAAA ACU    U
                    ACG    GGGUU GACUGUUUCA GUUUUUUU UGG    G
GAAAACCAACCAAUCAUCUC^  CUU-     U          C        A   UACA 
      110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Novel-5_5p

mirBase accessionNone
Sequence
0- UUGGCAAAGUCUGAAAAAAGACU -23
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Star sequence

Cmi-Novel-5_3p*

mirBase accessionNone
Sequence
35- UAUUUUUUUGCACUUUGUCAGUU -58
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