MirGeneDB 2.1

MirGeneDB ID

Cmi-Novel-4

Family name CMI-NOVEL-4 (all species)
Seed AAUGCAA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. milii
Node of Origin (family) C. milii
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635871.1: 2171974-2172034 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAAGUGAUCCCAUUCAGGUCUUCUGGGAGAAAUGCAAUGUGAUCUAAGGUUAUUUUAUCCCAGCUAAGUCUUGGGUCGCAUUUCAUGAUCUGUGCAAGAUGUGCCACCGCCUCACUAAAG
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Structure
        10          20         30        40        50          
GCAAGUGAUCCCAUUCAG--     CUG-|  GAA   C             GU AUUUUAU 
                    GUCUU    GGA   AUG AAUGUGAUCUAAG  U       \
                    UAGAA    UCU   UAC UUACGCUGGGUUC  A       C
GAAAUCACUCCGCCACCGUG     CGUG^  AG-   U             UG AUCGACC 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Novel-4_5p

mirBase accessionNone
Sequence
0- AAAUGCAAUGUGAUCUAAGGUU -22
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Star sequence

Cmi-Novel-4_3p*

mirBase accessionNone
Sequence
39- UCUUGGGUCGCAUUUCAUGAUC -61
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