MirGeneDB 2.1

MirGeneDB ID

Cmi-Novel-21

Family name CMI-NOVEL-21 (all species)
Seed ACGAAUA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. milii
Node of Origin (family) C. milii
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635859.1: 3728070-3728129 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCACCCCCCACCAUGUGGCGUUAGAGUUGACGAAUAGGACAUUUAUAUCCUAAAAUAUAAAUACUGGAUGUCAUGUGCUGUUCGGAUCUGUAAGGCCACUAAGCAUCCCACUUACCGC
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Structure
        10           20        30        40        50          
CCCCACCCCCCACCAUG---|   G   G  UUGA       G    UU      UAAAAUA 
                    UGGC UUA AG    CGAAUAG ACAU  AUAUCC       \
                    ACCG AAU UC    GCUUGUC UGUA  UGUAGG       U
CGCCAUUCACCCUACGAAUC^   G   G  UAG-       G    C-      UCAUAAA 
.       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Novel-21_5p

mirBase accessionNone
Sequence
0- GACGAAUAGGACAUUUAUAUCC -22
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Star sequence

Cmi-Novel-21_3p*

mirBase accessionNone
Sequence
39- AUGUCAUGUGCUGUUCGGAUC -60
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