| MirGeneDB ID | Cmi-Novel-2 |
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| Family name |
CMI-NOVEL-2 (all species) |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. milii
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| Node of Origin (family) |
C. milii
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635871.1: 2171974-2172034 [+]
UCSC
Ensembl
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| Seed |
AAUGCAA |
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Precursor
(pre-Mir +30nt flank) |
GCAAGUGAUCCCAUUCAGGUCUUCUGGGAGAAAUGCAAUGUGAUCUAAGGUUAUUUUAUCCCAGCUAAGUCUUGGGUCGCAUUUCAUGAUCUGUGCAAGAUGUGCCACCGCCUCACUAAAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCAAGUGAUCCCAUUCAG-- CUG-| GAA C GU AUUUUAU
GUCUU GGA AUG AAUGUGAUCUAAG U \
UAGAA UCU UAC UUACGCUGGGUUC A C
GAAAUCACUCCGCCACCGUG CGUG^ AG- U UG AUCGACC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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| Mature sequence |
Cmi-Novel-2_5p |
| mirBase accession | None |
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| Sequence |
0- AAAUGCAAUGUGAUCUAAGGUU -22
Get sequence
|
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| Star sequence |
Cmi-Novel-2_3p* |
| mirBase accession | None |
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| Sequence |
39- UCUUGGGUCGCAUUUCAUGAUC -61
Get sequence
|
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