MirGeneDB 2.1

MirGeneDB ID

Cmi-Novel-19

Family name CMI-NOVEL-19 (all species)
Seed GAGUGAC
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. milii
Node of Origin (family) C. milii
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635875.1: 3171072-3171130 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCCCGAAUACCUUUUACCUCCUGGCUGCACCUCUCUUCCCGUCACUCUCCGUUAUGAGGCAGCGCAGCGAGUGACAGGAAGAGAGGCAGAGCUGGAGGUAUGAUUCAUUCCUCCGCUC
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Structure
        10           20        30        40        50         
GCCCCGAAUACCUUUUA---|    U    GCA          C       UCCGUUAUGA 
                    CCUCC GGCU   CCUCUCUUCC GUCACUC          \
                    GGAGG UCGA   GGAGAGAAGG CAGUGAG          G
CUCGCCUCCUUACUUAGUAU^    -    GAC          A       CGACGCGACG 
       110       100         90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Star sequence

Cmi-Novel-19_5p*

mirBase accessionNone
Sequence
0- CCUCUCUUCCCGUCACUCUCC -21
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Mature sequence

Cmi-Novel-19_3p

mirBase accessionNone
Sequence
38- CGAGUGACAGGAAGAGAGGCA -59
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