| MirGeneDB ID | Cin-Mir-5600 |
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| Family name |
MIR-5600 (all species) |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-5600
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
7: 1895997-1896062 [-]
UCSC
Ensembl
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| Seed |
CGAAACC |
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Precursor
(pre-Mir +30nt flank) |
AUAUUUGUAAUGUCAUUUUUCAGGAGUUUUUCGAAACCAAAAUACUCCAGUUUGAUCCCGGUCAACUUACACAAAGUGGAAUGUUUUGUUUCGAACGAUUCUUUAAAACUGUCAACUGUCAUGAGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AUAUUUGUAAUGUCAUU--| C U C C G GAUCCCGGU
UUU AGGAGUU UUCGAAAC AAAAUA UCCA UUU \
AAA UUCUUAG AAGCUUUG UUUUGU AGGU AAA C
AGAGUACUGUCAACUGUCA^ U C - A G CACAUUCAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Mature sequence |
Cin-Mir-5600_5p |
| mirBase accession | MIMAT0022323 |
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| Sequence |
0- UCGAAACCAAAAUACUCCAGUUU -23
Get sequence
|
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| Star sequence |
Cin-Mir-5600_3p* |
| mirBase accession | MIMAT0022324 |
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| Sequence |
44- AGUGGAAUGUUUUGUUUCGAAC -66
Get sequence
|
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