| MirGeneDB ID | Cin-Mir-4127 |
|---|
| Family name |
MIR-4127 (all species) |
|---|
| Species |
Sea Squirt (Ciona intestinalis) |
|---|
| MiRBase ID |
cin-mir-4127
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. intestinalis
|
|---|
| Node of Origin (family) |
C. intestinalis
|
|---|
Genome context
(ci3) |
5: 2473269-2473324 [+]
UCSC
Ensembl
|
|---|
| Seed |
ACAGCUC |
|---|
Precursor
(pre-Mir +30nt flank) |
UUGUGAAAAAUUUUUAUGGCCGUUUCAAGUGACAGCUCGCUCAGCUGGCUGUGUGAUAAUCAACAGGCAGCUGUGAGAGAAGUUGCAAGAGACGGGAACUUUCUGCUGACUUCAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGUGAAAAAUUUUUAUGG--| AA UG AG GCU G GUGA
CCGUUUC G AC CUC CAGCUG CUGU U
GGCAGAG C UG GAG GUCGAC GACA A
AAACUUCAGUCGUCUUUCAAG^ AA GU AA AGU G ACUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Cin-Mir-4127_5p |
| mirBase accession | MIMAT0016721 |
|---|
| Sequence |
0- GACAGCUCGCUCAGCUGGCUGU -22
Get sequence
|
|---|
| Star sequence |
Cin-Mir-4127_3p* |
| mirBase accession | MIMAT0016722 |
|---|
| Sequence |
34- AGGCAGCUGUGAGAGAAGUUGC -56
Get sequence
|
|---|
