| MirGeneDB ID | Cin-Mir-4127 |
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| Family name |
MIR-4127 (all species) |
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| Seed |
ACAGCUC |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-4127
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
5: 2473269-2473324 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUGUGAAAAAUUUUUAUGGCCGUUUCAAGUGACAGCUCGCUCAGCUGGCUGUGUGAUAAUCAACAGGCAGCUGUGAGAGAAGUUGCAAGAGACGGGAACUUUCUGCUGACUUCAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUGUGAAAAAUUUUUAUGG--| AA UG AG GCU G GUGA
CCGUUUC G AC CUC CAGCUG CUGU U
GGCAGAG C UG GAG GUCGAC GACA A
AAACUUCAGUCGUCUUUCAAG^ AA GU AA AGU G ACUA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Ga |
La |
La |
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| Mature sequence |
Cin-Mir-4127_5p |
| mirBase accession | MIMAT0016721 |
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| Sequence |
0- GACAGCUCGCUCAGCUGGCUGU -22
Get sequence
|
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| Star sequence |
Cin-Mir-4127_3p* |
| mirBase accession | MIMAT0016722 |
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| Sequence |
34- AGGCAGCUGUGAGAGAAGUUGC -56
Get sequence
|
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